Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs77209726 chr5:74577701 A/C 2.0E-5 127 45.1 28.8 9.27 KM Plot
TGCT rs77271731 chr12:107188911 A/G 1.44E-7 133 44.05 28.8 103.33 KM Plot
TGCT rs7743466 chr6:42592012 G/C 1.59E-7 134 37.95 47.52 23.82 KM Plot
TGCT rs7745976 chr6:42573285 A/G 2.74E-8 133 20.6 51.67 37.7 KM Plot
TGCT rs77471757 chr8:96457390 A/G 1.64E-5 134 45.1 35.37 19.23 KM Plot
TGCT rs77508372 chr7:128721797 T/G 1.67E-5 134 42.27 31.17 17.1 KM Plot
TGCT rs7753593 chr6:42599704 C/T 1.59E-7 134 40.08 43.68 23.82 KM Plot
TGCT rs77604316 chr16:30921487 G/A 1.72E-13 132 39.38 81.3 17.1 KM Plot
TGCT rs7768451 chr6:157003689 A/C 0.000105 133 39.38 88.17 59.27 KM Plot
TGCT rs77734716 chr2:29505291 A/T 0 134 42.27 25.02 0.57 KM Plot
TGCT rs7773898 chr6:42599673 T/G 2.46E-8 134 37.95 49.93 20.6 KM Plot
TGCT rs7789577 chr7:127150498 C/T 1.49E-5 134 42.1 37.53 100.87 KM Plot
TGCT rs77896458 chr4:37237843 A/G 0 133 46.3 31.75 0.5 KM Plot
TGCT rs7789737 chr7:127150683 A/G 1.49E-5 134 42.1 37.53 100.87 KM Plot
TGCT rs7790439 chr7:127776139 C/T 1.78E-9 134 42.27 37.53 12.55 KM Plot